I have this error compiling ccx with precice (base on mpi):
a - precice/ConfigReader.o
C:\msys64\mingw64\bin\ar.exe: creating precice/ccx_2.17.a
mpifort -fopenmp -Wall -O2 -o precice/ccx_preCICE precice/ccx_2.17.o precice/ccx_2.17.a -lspoolesMT -lspooles -lprecice -lstdc++ -lws2_32 -L/mingw64/lib -lyaml-cpp /usr/local/ARPACK/libarpack_x64.a -lpthread -lm
C:/msys64/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/10.2.0/../../../../x86_64-w64-mingw32/bin/ld.exe: precice/ccx_2.17.a(ConfigReader.o):ConfigReader.cpp:(.text$_ZNK4YAML4Node6ScalarB5cxx11Ev[_ZNK4YAML4Node6ScalarB5cxx11Ev]+0x8e): undefined reference to `YAML::detail::node_data::empty_scalar[abi:cxx11]()'
collect2.exe: error: ld returned 1 exit status
make: *** [Makefile:100: precice/ccx_preCICE] Error 1
My Makefile:
# See our wiki for getting the CalculiX dependencies:
# https://github.com/precice/calculix-adapter/wiki/Installation-instructions-for-CalculiX
# Set the following variables before building:
# Path to original CalculiX source (e.g. $(HOME)/ccx_2.17/src )
CCX = /usr/local/CalculiX/ccx_2.17precice/src
# Path to SPOOLES main directory (e.g. $(HOME)/SPOOLES.2.2 )
SPOOLES = /mingw64/include/spooles
# Path to ARPACK main directory (e.g. $(HOME)/ARPACK )
ARPACK = /usr/local/ARPACK
# Path to yaml-cpp prefix (e.g. $(HOME)/yaml-cpp, should contain "include" and "build")
YAML = /mingw64
# Get the CFLAGS and LIBS from pkg-config (preCICE version >= 1.4.0).
# If pkg-config cannot find the libprecice.pc meta-file, you may need to set the
# path where this is stored into PKG_CONFIG_PATH when building the adapter.
PKGCONF_CFLAGS = $(shell pkg-config --cflags libprecice)
PKGCONF_LIBS = $(shell pkg-config --libs libprecice)
# Specify where to store the generated .o files
OBJDIR = precice
# Includes and libs
INCLUDES = \
-I./ \
-I./adapter \
-I$(CCX) \
-I$(SPOOLES) \
$(PKGCONF_CFLAGS) \
-I$(ARPACK) \
-I$(YAML)/yaml-cpp/include
LIBS = \
-lspoolesMT \
-lspooles \
$(PKGCONF_LIBS) \
-lstdc++ \
-lws2_32 \
-L$(YAML)/lib -lyaml-cpp \
# OS-specific options
UNAME_S := $(shell uname -s)
ifeq ($(UNAME_S),Darwin)
LIBS += $(ARPACK)/libarpack_x64.a
else
LIBS += $(ARPACK)/libarpack_x64.a
LIBS += -lpthread -lm
#-lc
endif
# Compilers and flags
#CFLAGS = -g -Wall -std=c++11 -O0 -fopenmp $(INCLUDES) -DARCH="Linux" -DSPOOLES -DARPACK -DMATRIXSTORAGE
#FFLAGS = -g -Wall -O0 -fopenmp $(INCLUDES)
CFLAGS = -Wall -O2 -fopenmp $(INCLUDES) -DARCH="Linux" -DSPOOLES -DUSE_MT=1 -DARPACK -DMATRIXSTORAGE -fcommon
# OS-specific options
ifeq ($(UNAME_S),Darwin)
CC = gcc
else
CC = mpicc
endif
FFLAGS = -Wall -O2 -fopenmp $(INCLUDES) -fallow-argument-mismatch
FC = mpifort
# FC = mpif90
# FC = gfortran
# Include a list of all the source files
include $(CCX)/Makefile.inc
SCCXMAIN = ccx_2.17.c
# Append additional sources
SCCXC += nonlingeo_precice.c CCXHelpers.c PreciceInterface.c
SCCXF += getflux.f getkdeltatemp.f
# Source files in this folder and in the adapter directory
$(OBJDIR)/%.o : %.c
$(CC) $(CFLAGS) -c $< -o $@
$(OBJDIR)/%.o : %.f
$(FC) $(FFLAGS) -c $< -o $@
$(OBJDIR)/%.o : adapter/%.c
$(CC) $(CFLAGS) -c $< -o $@
$(OBJDIR)/%.o : adapter/%.cpp
g++ -std=c++11 -I$(YAML)/include -c $< -o $@ $(LIBS)
#$(CC) $(CFLAGS) $(INCLUDES) -c $< -o $@ $(LIBS)
# Source files in the $(CCX) folder
$(OBJDIR)/%.o : $(CCX)/%.c
$(CC) $(CFLAGS) -c $< -o $@
$(OBJDIR)/%.o : $(CCX)/%.f
$(FC) $(FFLAGS) -c $< -o $@
# Generate list of object files from the source files, prepend $(OBJDIR)
OCCXF = $(SCCXF:%.f=$(OBJDIR)/%.o)
OCCXC = $(SCCXC:%.c=$(OBJDIR)/%.o)
OCCXMAIN = $(SCCXMAIN:%.c=$(OBJDIR)/%.o)
OCCXC += $(OBJDIR)/ConfigReader.o
$(OBJDIR)/ccx_preCICE: $(OBJDIR) $(OCCXMAIN) $(OBJDIR)/ccx_2.17.a
$(FC) -fopenmp -Wall -O2 -o $@ $(OCCXMAIN) $(OBJDIR)/ccx_2.17.a $(LIBS)
$(OBJDIR)/ccx_2.17.a: $(OCCXF) $(OCCXC)
ar vr $@ $?
$(OBJDIR):
mkdir -p $(OBJDIR)
clean:
rm -f $(OBJDIR)/*.o $(OBJDIR)/ccx_2.17.a $(OBJDIR)/ccx_preCICE