Segmentation Fault, address not mapped

Using preCICE
1

Background of system

  • preCICE v2.5.1
  • Operating system or platform: Ubuntu 22.04
  • Installation method :CMake
  • Boost compiler
when kicking off dust-precice coupled run:
   Iteration ▶  1.0
[] *** Process received signal ***
[] Signal: Segmentation fault (11)
[] Signal code: Address not mapped (1)
[] Failing at address: 0x4f0
[] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fb1f5def520]
[] [ 1] /home/aeschu3265/.local/lib/python3.10/site-packages/cyprecice.cpython-310-x86_64-linux-gnu.so(+0x293b8)[0x7fb14ff7b3b8]
[] [ 2] python(_PyEval_EvalFrameDefault+0x8ac)[0x562d2057b45c]
[] [ 3] python(_PyFunction_Vectorcall+0x7c)[0x562d205929fc]
[] [ 4] python(_PyEval_EvalFrameDefault+0x8ac)[0x562d2057b45c]
[] [ 5] python(_PyFunction_Vectorcall+0x7c)[0x562d205929fc]
[] [ 6] python(_PyEval_EvalFrameDefault+0x6bd)[0x562d2057b26d]
[] [ 7] python(+0x13f9c6)[0x562d205779c6]
[] [ 8] python(PyEval_EvalCode+0x86)[0x562d2066d256]
[] [ 9] python(+0x260108)[0x562d20698108]
[] [10] python(+0x2599cb)[0x562d206919cb]
[] [11] python(+0x25fe55)[0x562d20697e55]
[] [12] python(_PyRun_SimpleFileObject+0x1a8)[0x562d20697338]
[] [13] python(_PyRun_AnyFileObject+0x43)[0x562d20696f83]
[] [14] python(Py_RunMain+0x2be)[0x562d20689a5e]
[] [15] python(Py_BytesMain+0x2d)[0x562d2066002d]
[] [16] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fb1f5dd6d90]
[] [17] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fb1f5dd6e40]
[] [18] python(_start+0x25)[0x562d2065ff25]
[] *** End of error message ***
ExtSocketHandler: recv()=0 (expected 1)
Segmentation fault

No log files produced.

I have seen a solution for v2.5.0 that says run pip install “cython<3”, but that has not resolved the issue for me.

Any help is much appreciated!

2

Hi @cschultz3265,

I am afraid I have too little context to help. What is dust-precice? Was it ever working? If yes, what did you change?

Which version of the python bindings are you using?

Any more details could help.

3

Hi Makis,

Dust is the aerodynamics solver being used in my coupled simulation. It was working on a Ubuntu 20.04 machine with Dust version 0.8.0 and Precice v2.5.0 and Python 3.8 and 2.7.

This version is on Ubuntu 22.04, Precice v2.5.1 ( have also tried v2.5.0 and v3.0.0 ), and Dust 8.2.0. Python 3.10 and 2.7 are what is installed currently.

Of note, I am using “-dev” installs for python.

Those are the only changes I can think of.

Hopefully this is more helpful!

4

Thanks! And how did you install preCICE?

Are other preCICE tutorials working?

Definitely do not use Python 2.

5

I am not running it with python2. I just was letting you know since you asked which python bindings were on the machine.

install sequence:
"
sudo wget https://github.com/precice/precice/releases/download/v2.5.1/libprecice2_2.5.1_jammy.deb
sudo apt install ./libprecice2_2.5.1_jammy.deb
"
I have not tried other preCICE tutorials.

6

has the problem been solved？? I would like to ask if you can share installation tutorial of dust with precice. When I installed dust with precice, something wrong when make。

7

What happens if you try the elastic-tube-1d (Python variant)?

This would help us understand whether the problem is already at the level of preCICE/Python bindings + dependencies, or at the level of the adapter and Dust (and dependencies).