srun: Job step aborted: Waiting up to 32 seconds for job step to finish. [8]PETSC ERROR: ------------------------------------------------------------------------ [8]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [8]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [8]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [8]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [8]PETSC ERROR: to get more information on the crash. [23]PETSC ERROR: ------------------------------------------------------------------------ [23]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [23]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [23]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [23]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [23]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [23]PETSC ERROR: to get more information on the crash. [23]PETSC ERROR: User provided function() line 0 in unknown file [31]PETSC ERROR: ------------------------------------------------------------------------ [31]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [31]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [31]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [31]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [31]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [31]PETSC ERROR: to get more information on the crash. [31]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 31 [35]PETSC ERROR: ------------------------------------------------------------------------ [35]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [35]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [35]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [35]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [35]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [35]PETSC ERROR: to get more information on the crash. [35]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 35 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 0 [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [1]PETSC ERROR: to get more information on the crash. [1]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 1 [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [2]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [2]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [2]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [2]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [2]PETSC ERROR: to get more information on the crash. [2]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 2 [3]PETSC ERROR: ------------------------------------------------------------------------ [3]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [3]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [3]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [3]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [3]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [3]PETSC ERROR: to get more information on the crash. [3]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 3 [4]PETSC ERROR: ------------------------------------------------------------------------ [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [4]PETSC ERROR: to get more information on the crash. [4]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 4 [5]PETSC ERROR: ------------------------------------------------------------------------ [5]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [5]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [5]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [5]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [5]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [5]PETSC ERROR: to get more information on the crash. [5]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 5 [6]PETSC ERROR: ------------------------------------------------------------------------ [6]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [6]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [6]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [6]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [6]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [6]PETSC ERROR: to get more information on the crash. [6]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 6 [7]PETSC ERROR: ------------------------------------------------------------------------ [7]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [7]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [7]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [7]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [7]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [7]PETSC ERROR: to get more information on the crash. [7]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 7 [8]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 8 [9]PETSC ERROR: ------------------------------------------------------------------------ [9]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [9]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [9]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [9]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [9]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [9]PETSC ERROR: to get more information on the crash. [9]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 9 [10]PETSC ERROR: ------------------------------------------------------------------------ [10]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [10]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [10]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [10]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [10]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [10]PETSC ERROR: to get more information on the crash. [10]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 10 [11]PETSC ERROR: ------------------------------------------------------------------------ [11]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [11]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [11]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [11]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [11]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [11]PETSC ERROR: to get more information on the crash. [11]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 11 [12]PETSC ERROR: ------------------------------------------------------------------------ [12]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [12]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [12]PETSC ERROR: to get more information on the crash. [12]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 12 [13]PETSC ERROR: ------------------------------------------------------------------------ [13]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [13]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [13]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [13]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [13]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [13]PETSC ERROR: to get more information on the crash. [13]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 13 srun: error: r1i3n34: tasks 0-35: Killed [14]PETSC ERROR: ------------------------------------------------------------------------ [14]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [14]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [14]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [14]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [14]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [14]PETSC ERROR: to get more information on the crash. [14]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 14 [15]PETSC ERROR: ------------------------------------------------------------------------ [15]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [15]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [15]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [15]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [15]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [15]PETSC ERROR: to get more information on the crash. [15]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 15 [16]PETSC ERROR: ------------------------------------------------------------------------ [16]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [16]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [16]PETSC ERROR: or see https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [16]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [16]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [16]PETSC ERROR: to get more information on the crash. [16]PETSC ERROR: User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 30064059) - process 16